Thursday 13 October 2016

Big Game Species of GB


Big Game Species of GB

 
Markhor
Local name: Markhor (Urdu)
4 Subspecies:
Flared horned Markhor:
·         C. f. cashmirensis (Pir Panjal or Kashmir markhor),
·         C. f. falconeri (Astor markhor)
Straight horned Markhor:
·         C. f. jerdoni (Suleiman or straight-horned markhor)
·         C. f. megaceros (Kabul or Kabal markhor)
Description and Biology:
Size:
Body Length: 132-186 cm / 4.4-6.2 ft.
Shoulder Height: 65-115 cm / 2.1-3.8 ft.
Tail Length: 8-20 cm / 3.2-8 in.
Weight: 32-110 kg / 70-242 lb.
Description: The most distinctively-horned member of the genus Capra, the markhor was officially described in 1839 by Wagner. In Pakistan 4 distinct subspecies are found. These are the Kashmir Markhor (C. f. cashmirensis) , Astor Markhor (C. f. falconeri ), The Kabul Markhor ( C. f. megaceros) and The Suleiman Markhor (C. f. jerdoni ). These are differentiated mainly by the shape of their horns. The Kashmir and Astor Markhor have flared spiral horns, while the Suleiman and Kabul Markhor have straight spiral horns. The grizzled light brown to black coat is smooth and short in summer, growing longer and thicker in winter. Males have long hair on the chin, throat, chest, and shanks, while females have smaller fringes. The lower legs have a black and white pattern. The tightly curled, corkscrew-like horns are present in both sexes,starting close together at the head, but spreading towards the tips. In males, they can grow up to 160 cm /64 inches long, and up to 25 cm / 10 inches in females.
Reproduction: Gestation Period: 135-170 days. Young per Birth: 1 or 2, rarely 3. Mating occurs during winter, with the subsequent births occuring from late April to early June. Sexual Maturity: At 18-30 months.
Social Behavior: The markhor is mainly active in the early morning and late afternoon. During the spring and summer months it is a grazer, while in the winter it turns to browse for nourishment. Markhor often stand on their hind legs in order to reach high vegetation. Population densities in Pakistan range from 1-9 animals per square kilometer. During the rut males fight for breeding rights. These competitions involve lunging and locking the horns, followed by the combatants twisting and pushing in an attempt to make the other lose his balance. The markhor's alarm call resembles the nasal "a" populalarized by the common domestic goat. Females and young live in herds of around 9 animals, adult males are usually solitary.
Diet: Grasses, leaves. The name markhor is derived from the Persian mar, a snake, and khor, eating. This is a very peculiar name, as they are vegetarians, though they have been known to kill snakes.
Habitat and Distribution:
The Markhor mainly inhabits the sparsely wooded mountainous regions in Northern and Western Pakistan, at an elevation of 600-3,600 m / 1,900-11,500 ft. The total world population is mainly found in Pakistan. Today, Markhor are present in around 20 of Pakistan's protected areas. In the northern mountanious regions is found the Kashmir and Astor Markhor. The Kashmir Markhor (C. f. cashmirensis ) is mainly confined to Chitral Gol National Park and presents the biggest population in Pakistan. Poaching has been successfully controlled and now there are over 500 Markhor in Chitral Gol National Park. The Kashmir Markhor is also found in areas of Gilgit and Azad Kashmir. The Astor Markhor (C. f. falconeri) is mainly confined to the higher hill ranges of Gilgit, Hunza and Nanga Parbat. The only good population is in the Kargah Nullah and Naltar, near Gilgit. The Kargah Nullah might have a total population of 50 Markhors. Current population estimates are less than 2,500 to 3,000 for the flared horned markhor in Pakistan (Hess et al. 1997).
The Markhor is a highly-valued trophy species. A single trophy license is sold for as much as $18, 000. Recently, the Pakistani Government has started issuing 2-3 licenses each year for trophy hunting. Money from this trophy hunting goes for the welfare of the local community. Despite this illegal hunting goes unchecked. The decade long war and civil war in Afghanistan has resulted in the influx of sophisticated weapons in Pakistan. Abundance of weapons available under these circumstances has led to many populations being hunted to extinction or near extinction. Because the cliffs the species inhabits are scattered throughout its range, the Markhor has probably always had a discontinuous distribution. As populations are exterminated or severely reduced by man, there is little chance of these areas being recolonised by other Markhor. The populations become ever more scattered and diminished. In parts of their range the Markhor also face competition from domestic goats and other livestock for limited food supplies. Much of the region where they live has been degraded by overgrazing, leading to a serious risk of erosion. There is also the possibility that the Markhor will hybridise with feral goats, leading to dilution of stock and the loss of pure-bred populations of the species.

 Himalayan or Siberian Ibex
Description and Biology:
Size:
Shoulder Height: 95cm-101.7cm
Weight: 85-88 kg / 188-193 lb.
Description: The Ibex are somewhat heavy bodied and thick set even when compared to the other wild goat species, and have short sturdy legs. Mature males have a much paler body colouring with predominantly white or creamy hairs on the flank and rump when in winter coat. Females and young males are a reddish-tan or almost a golden colour in summer coat with a greyer-brown appearance in winter, due to an admixture of white hairs. Older males have a rich chocolate-brown colour in summer with circular patches of yellowish-white hair in the mid-dorsal and rump regions. The winter coat is dense thick and whoolly and cracks like the fleece of domestic seep. The underwool of the Ibex, has long been prized for producing the softest and most luxurious quality of wool called "Pashm". In both sexes there is a thick woolly beard. Both sexes have a mid dorsal dark brown stripe running from the shoulder to the tip of the tail. The Himalayan Ibex can be seperated from the Alpine population by the horn shape which, in adult males, grows much longer, curving round to form three-quarters of a complete arc and tapering to relatively slender points. The horns of an adult male are large and impressive despite the bulk of the animal and measure average 101.6cm (40 in). Unlike other wild goats there is no distinct white carpal patch on the fore-leg.
Reproduction: Gestation Period: 155 to 170 days. Young per Birth: 1, but twins are also common. The young are born from May or early June. Weaning: Between four and five months of age. Life span:10-12 years.
Social Behavior: The Himalayan Ibex is gregarious like all wild goats. Young males, females and their followers normally associate in small herds varying from seven or eight upto thirty individuals. Feeding activity appears to be confined largely to early morning and late afternoon even in fairly remote regions.
Diet: Winter feeding conditions are harsh due to heavy rainfall and Ibex have to dig for grasses, bushes, mosses
Habitat and Distribution:
Confined to the relatively arid mountain ranges of the inner-Himalayas, living well above the tree line only in the higher more precipitous regions. They occur from about 3,660m to over 5,000m in Pakistan, but are sometimes seen crossing valleys below 2,135m. The Himalayan Ibex is widespread in the higher mountain ranges of Baltistan in Karakoram Range, the Harmosh Range, and the Deosai. They are considered plentiful in Khunjerab National Park, Gilgit, Yasin and Hunza. Wegge (1998), who surveyed the Khunjerab National Park for IUCN, estimated the total population of ibex within the area to be more than 2,000 animals, which works out at about one animal per sq. km. Small populations are also found in Chilas and the slopes of Malika Parbat in Hazara. Some are also found in Azad Kashmir. Baltistan and Hunza are undoubtly the strongholds of the Himalayan Ibex in the region today. The survival of the Himalayan Ibex is not so threatened in Pakistan largely due to the inaccessibility of its habit provided by the very extensive concentration of high mountain ranges where it lives . (all above information from "The Mammals of Pakistan" by T.J Roberts).
 
  
Marco Polo Sheep
Local name: Rusch (Wakhi: Northern Hunza)
Description and Biology:
Size:
Shoulder Height: 110-122cm / 43.5-48in.
Weight: 113.5-140kg / 250-308lb.
Description: Within Pakistan territory only the Marcopolo subspecies of the Argali occurs. It is recognized by the very long outward curving horns, developed in the mature males. An aged ram is surely one of the most impressive representatives of the entire order Artiodactyla, being not only the bearer of massive spiralling horns which can span a man's outstretched arms, but also being almost twice the height and size of most other wild or domestic sheep.
In summer the hair on the body is short and coarse and of a sandy-reddish colour with the face and breast having an admixture of grey and white hairs. The legs and belly are creamy-white without any darker pattern on the frontal part of the shin such as is found in the goats or the Bharal. In winter, because of thicker underwool, the animal looks bulkier and slightly greyer, with much white about the neck and chest in old rams. Not surprisingly, the neck in rams tends to be heaver and muscular. The tail is short and not bushy and in both sexes the legs appear relatively long and slender when compared with the wild goats. There is more extensive white area in the caudal region as compared to the Urial. There is no long-haired chest ruff in the rams as in various races of Urial.
In a mature ram, the horns curve outwards describing more than a complete arc, their distal quarter or third, forming another turn. They are broad and massive at their base. In 1967 a 137cm(54in) had was shot in Pakistan by Captain Gauhar Ayub on the Khunjerab Pass in Hunza.
Reproduction: Gestation Period: 5.5 months. Young per Birth: Single or occasional twin lambs being born in May and June. Rut: The rut is well marked and of short duration as in all wild sheep. The rut takes place later in November and even extending to early December. Life Span: around 13 years.
Social Behavior: This is a gregarious species, generally congregating in herds of a dozen up to over a hundred individuals. These herds consist of females with their sub-adult young and immature males. Outside the rutting season mature rams live in small bands of two or three, rarely up to five or six occurring together. They confine their feeding activity to a few hours just after dawn and again become active in the evening. During the middle of the day they retreat to some higher boulder-strewn ridge where they lie down and chew the cud. They have etremely keen eyesight and sense of smell and are always very wary and difficult to approach. When danger threatens flocks tend to bunch together, and both sexes have been observed to stamp their feet and after running some distance away to again stop and turn to face the danger. Apart from the grunting call emitted by rams in combat, lambs also call their mothers with a typically "merrhing" call when they lose contact.
Diet: They graze mainly on the scattered bunches of coarse grass. In the northern part of Hunza in winter they feed on the scattered clumps of wild onions. (all above information from " The Mammals of Pakistan" by T.J Roberts).
Habitat and Distribution:
The Marco Polo sheep is an inhabitant of very high mountain plateau regions subject to severly cold winds and rather arid climatic conditions throughout the year. Currently, Marco Polo sheep has a very limited spatial and temporal distribution in Pakistan. It is confined to probably at most, three remnant populations in the northwestern part of Hunza district along the Chinese border. Here, between spring and autumn, it occupies two sperate valleys in the noethwest section of Khunjerab National Park, and also inhabits the Kilik-Mintaka border area, just west of the National Park. Schaller et al. (1987) found no sign of this argali on the Chinese side of Khunjerab pass , and suggested that the population of the Khunjerab area was isolated.
Construction and opening of the Karakoram Highway has been a major factor in the rise of poaching for this argali. Competition for forage, created by the presence of an estimated 700 feral yaks and at least 3,000 domestic goats and sheep in the Karchanai Nullah of Khunjerab NP, is an increasing problem that local park officials are unable to deal with. Marco Polo sheep is probably the most endangered of Pakistan's wild sheep and goats, and unless action is taken immediately they will probably become extinct.
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Bharal or Blue Sheep


Local name: Bharal (Urdu)
Description and Biology:
Size:
Body Length: 115-165 cm / 3.8-5.5 ft.
Shoulder Height: 75-90 cm / 2.5-3 ft.
Tail Length: 10-20 cm / 4-8 in.
Weight: 35-75 kg / 77-165 lb.
Description: The bharal was described by Hodgson in 1833. Bharal is a Hindi name, while "blue sheep" is a reference to the bluish sheen in the coat. The short, dense coat is slate grey in colour, sometimes with a bluish sheen. The underparts and backs of the legs are white, while the chest and fronts of the legs are black. Separating the grey back and white belly is a charcoal coloured stripe. The ears are small, and the bridge of the nose is dark. The horns are found in both sexes, and are ridged on the upper surface. In males, they grow upwards, then turn sideways and curve backwards, looking somewhat like an upside-down moustache. They may grow to a length of 80 cm/ 32 in. In females, the horns are much shorter and straighter, growing up to 20 cm / 8 inches long.
Reproduction: Gestation Period: 160 days. Young per Birth: 1. Mating occurs between October and January, with the young being born from May to July. Weaning: After 6 months. Sexual Maturity: At 1.5 years, although males do not reach their full potential before age 7. Life span: 12-15 years.
Social Behavior: Solitary or in small groups of less than 20 animals which consist of almost entirely one sex. Bharal are active throughout the day, alternating between feeding and resting on the grassy mountain slopes. Due to their excellent camouflage and the absense of cover in their environment, bharal remain motionless when approached. Once they have been noticed, however, they scamper up to the precipitous cliffs, where they once again freeze, 'melting' into the rock face. Bharal are the favourite prey of the Snow Leopard.
Diet: Grasses, lichens, hardy herbacious plants, mosses.
Habitat and Distribution:

In Pakistan the Bharal inhabits the remote and inaccesible mountian ranges of the Karakoram in Northern Pakistan at 3000-5550 m / 10,000-18,500 ft. Blue sheep are not as agile as ibex,and are typically found on more open and grassy areas. Blue sheep are found in Chat Pirt and Ghujerav areas of Shimshal in Baltistan (information by Sher Ali: Shimshal Nature Trust). They are also found in Khunjerab National Park. Shimshal marks the western most limit of their range in the Himalaya. It is believed that Bharal are common in the Shimshal area, but overall they are very local in distribution in Pakistan. Bharal meat is favoured by Shimshalis and they are hunted quiet often.

Health Issues of Rural Areas

                                                   Health Issues of Rural Areas
 “It is said that health is very precious gift by God to human being but it is also a soreness adversary if you don’t care properly.” Unfortunately rural areas are still backward in health related domains.
            Rural areas are those areas where people spend hard lives; belong to lower classes and usually their health issues are at peak. Like Gilgit Baltistan, interior Sindh, Baluchistan and the outer areas of Punjab as well. People from these areas are suffered by the diseases like; HIV, SRH, BRAIN TUMOR, SCHIZOPHRENIA, SEXUAL REPRODUCTIVITY and other diseases related to heart and brain. These diseases are not entertained at government hospitals and dispensaries. On the other hand there are some private clinics and local health caretakers (HAKEEMS), who treat patients on high costs but the people cannot afford such expensive treatments because of their poorness and unemployment. Sometimes people prey to death due not to proper treatments. As we talked about the meagerness of people living in these areas, however, it is much pitiable issue and still government is unaware of their dangerous problems which may cause death.
            The appointed accountable persons are responsible to tackle these issues but it is likely unawareness of jurisdictions for ignoring such rural areas where health problems do speak. Rural areas are openly being ignored by government of Pakistan. Are these people not Pakistani? If so then what is their identity? If no then why should this atrocity be with these areas? Why these issues are not being discussed by government? People are frustrated with the war against their health. There are so many areas where people cannot get medicine for even headache. While talking about the health issues of rural areas, I compulsively have to say that government has lost its conscious and does deserve governance in the state. However, health problems must be the first priority to solve, but at the current scenario health is not considered such a problem.
            Government must show the system of equality for both urban and rural areas. It is an essential factor to discuss over because without health everything costs nothing. Health is the main issue which made rural lives very difficult. These areas do not have the proper facilities of health. Sometimes poor people prey to death just because of not proper treatment and lake of other health facilities. Government must observe these challenges of rural areas and should provide pure remedy in the form of hospitals, dispensaries, doctors, health experts and medicines as well because rural areas also have right to get rid of their ailments.

            Going through above mentioned health issues I personally observe the point that rural areas are being fully disregarded by health ministry of Pakistan. Government should provide every treatment to these areas with affordable fee and should implement scientific technology in the hospitals.

Friday 1 July 2016

Bioinformatics in agriculture



Bioinformatics in Agriculture
                                
                                       
                                                                 Sajid Ali
                                                                  BS VIII

                                    Registration no:                       2012-kiu-094
Course facilitator:                   Sir Tika-khan
 Subject:                                   Bioinformatics        
Date of submission:                9/10/ 2015


                                        Department of Biological Sciences

Introduction
Bioinformatics is a new field of science but it is making progress in every field of biotechnology very rapidly. As it has its application in the medicine by providing the genome information of various organisms, similarly the field of agriculture has also taken advantage of this field because microorganisms play an important role in agriculture and bioinformatics provides full genomic information of these organisms. The genome sequencing of the plants and animals has also provided benefits to agriculture.
Bioinformatics has grown into a large topic, but still one of the most widely used tools in bioinformatics is that for searching a sequence database for all sequences similar to a given query sequence (Waterman, 2000). There are three main bioinformatics problems:
1.  Connection with “Dogma”: sequence, structure and function.
2.  Connection with data: keeping, access and analysis.
3.  Biological process simulation.

Tools of bioinformatics are playing significant role in providing the information about the genes present in the genome of the species. These tools have also made it possible to predict the function of different genes and factors affecting these genes. The information provided about the genes by the tools makes the scientists to produce enhanced species of plants which have drought, herbicide, and pesticide resistance in them. Certain changes can be made in their genome to make them disease resistant. Declining  costs  have  enabled  geneticists  to  move towards  genome-wide  genotyping  arrays  and  Genotyping-by-sequencing  (GBS).  Data analysis, storage and management are the most essential elements of these technologies. A computer system for genetic studies in agriculture has certain requirements in common, regardless of the technology used and the species. These requirements can be broken into two major categories, data management and data analysis. Data management requires storage and backup  systems  of  the  raw  data,  a  large  memory  workspace  to  process  data,  methods  to extract  relevant  variables  for  analysis,  and  sufficient  bandwidth  to  transfer  data  among different  sites,  servers, and  researchers. Data analysis usually  is performed with  specialized software  and,  depending  on  the  analysis,  may  require  parallel  and  high  performance computing  (HPC).These  requirements  have  become  a  significant  barrier  to  progress  in genomics, particularly in agriculture. We  introduce  a web  application  specifically  tailored  for  agriculture  genetics  studies  that addresses  these problems. The  system  is  comprised of  a  relational database  and  a  software application  for  managing  and  analyzing  genotypes,  traits,  and  annotations.  The  system reduces  programming  and  computing  overhead  while  providing  a  flexible  and  scalable framework  for  new  genotyping  technologies  and  accumulating  samples  and  variables. The system uses a centralized database, allowing researchers concurrent access to study data and the ability to share results in real time.  In  the  next  section,  we  give  an  overview  of  the  software  design  and  describe  the database, web application, and interfaces to external software.
In a recent report by the Food and Agriculture Organization of the United Nations (FAO), it  is estimated  that by  the year 2050  the population of  the world will  increase by 34%. This increase will demand a 70% increase in food production. Presently there exists a tightly balanced supply and demand in food production. A single shock to the system (e.g., a natural disaster or disease) may create a food shortage.  Technology  can  be  used  to  alleviate  this sensitivity,  one  of  which  is  in  the  field  of  genetics.  DNA  genotyping  and  sequencing technologies  are  being  used  to  uncovering  the  genetic  component  of  important  traits  and diseases  in plants and animals. Desirable traits such as high yield and higher nutritional content are cultivated and preserved while undesirable traits such as genetic susceptibility to disease are removed. Most  trait mapping  studies  use  genetic  variants  called  single-nucleotide  polymorphisms (SNP) due to their abundance and relatively even distribution  throughout  the genome.
Bioinformatics has aided  in genome  sequencing, and has  shown its  success  in  locating  the  genes,  in  phylogenetic  comparison  and  in  the These  tools  range  from  image  the  processing  techniques  that  read  out  the data, to the visualization tools that provide a first-sight hint to the biologists; from  preprocessing  techniques  (Durbin  et  al.,  2002)  that  remove  the systematic  noise  in  the  data  to  the  clustering methods  (Eisen  et  al.,  1998; Sheng  et  al.,  2003)  that  reveal  genes  that  behave  similarly  under  different experimental conditions. In proteomics, bioinformatics helps in the study of protein structures and  the discovery of sequence sites where protein-protein interactions  take  place. To  help  understanding  biology  at  the  system  level, bioinformatics  begins  to  show  promise  in  unraveling  genetic  networks  (Segal  et  al., 2003). Bioinformatics  is used  to  study  the  dynamics  in  a  cell,  and  thus  to  simulate  the  cellular interactions (978 Jian Xue et al.)
Application of Bioinformatics in Agriculture
Plant life plays important and diverse  roles  in our society, our economy, and our global environment. Especially crop is the most important plants to us. Feeding the increasing world population is a challenge for modern plant biotechnology. Crop yields have  increased during  the  last century  and will continue  to  improve  as  agronomy  re-assorting  the  enhanced  breeding  and develop new biotechnological-engineered strategies.
The onset of genomics is providing massive information to improve crop phenotypes.  The accumulation  of  sequence  data  allows  detailed  genome  analysis  by  using friendly  database  access  and  information  retrieval. Genetic  and molecular genome  co  linearity  allows  efficient  transfer  of  data  revealing  extensive conservation of genome organization between species. The goals of genome research are  the  identification of  the  sequenced genes and  the deduction of their  functions  by metabolic  analysis  and  reverses  genetic  screens  of  gene knockouts. Over 20% of the predicted genes occur as cluster of related genes generating a considerable proportion of gene families. Multiple alignments provides a method to estimate the number of genes in gene families allowing the identification of previously undescribed genes. This information enables new strategies to study gene expression patterns in plants.  Available information from news technologies, as the database stored DNA microarray expression data, will help plant biology functional genomics.  Expressed sequence tags (ESTs) also give the opportunity to perform “digital northern” comparison  of  gene  expression  levels  providing  initial  clues  toward unknown  regulatory  phenomena.
Crops: -
When the evolutionary changes occurred in the plants, their genome remained conserved and did not provided much information. Since the arrival of bioinformatics tools, it is possible to extract the required information from the genome of specific plants. There are two species of food plants, the genome of which has been mapped completely for example Arabidopsis thaliana and Oryza sativa. These two species of plants have their names in English as water cress and rice respectively.

Water cress is a small plant which is found on the rocks. Researchers took interest in its genome because of its smaller genomic size and studied the plant developmental processes. Its genome consists of 5 chromosomes on which 100 Mbp DNA is distributed. It reproduces in 5 weeks and makes new generation. The understanding about its genes and their expressions provides information about the other plants' proteins and their expressions. There are many uses of knowing the genome of A. thaliana but the major use is that the yield of the plants can be increased.

Insect Resistance: -
Many plants have been made insect resistant by incorporating the desired genes. Bacillus Thuringiensis is bacterial specie which increases the soil fertility and protects the plants against pests. When the researchers mapped its genome, they used its genes to incorporate into the plant to make it resistant against insects. For example, corn, cotton and potatoes have been made insect resistant so far. By having the genes of bacteria in the plants genome, when insects eat the plants, the bacteria enter in their bloodstream and make them starved, ultimately they die. Bt corn is one species of food plants which have been modified by inserting bacterial genes in it. It is effective against insects by developing resistance against them. The use of BT genes in the plants genome has made the agriculturists to use the insecticides in very little amount. As a result the productivity and nutritional value of plants will also increase and will be beneficent for human health.

Improve nutritional Quality: -
When the changes are made in the genome of the plants, the nutritional value of plants also increases. For example some genes are inserted in the rice genome to increase the Vitamin A level in the crop. Vitamin A is an important component for the eyes and if the Vitamin A deficiency occurs in the body, it may result in blindness. This work has allowed the scientists to reduce the rate of blindness from the world by giving genetically modified rice to the people.

Poorer soils and Drought Resistant: -
Some varieties of cereals are developed which have the ability to grow in poor soils and are drought resistant. Due to this method, those areas can also be used which have less soil fertility
.